Index

A

a_rates (pyqrse.fittools.sampling.QRSESampler attribute) AAC2QRSEKernel (class in pyqrse.kernels.testkernels) AAQRSEKernel (class in pyqrse.kernels.ternarykernels) AAQRSEKernelLSE (class in pyqrse.kernels.testkernels) AAXQRSEKernel (class in pyqrse.kernels.ternarykernels) ab_prior_make() (in module pyqrse.utilities.mathstats) ABQRSEKernel (class in pyqrse.kernels.binarykernels) ABXCQRSEKernel (class in pyqrse.kernels.binarykernels) ABXQRSEKernel (class in pyqrse.kernels.binarykernels) ABXQRSEKernelNH (class in pyqrse.kernels.binarykernels) action_entropy() (pyqrse.model.model.QRSEModel method) actions (pyqrse.kernels.basekernels.QRSEKernelBase attribute) (pyqrse.model.model.QRSEModel attribute)

add_data() (pyqrse.model.model.QRSEModel method) aic() (pyqrse.model.model.QRSEModel method) aicc() (pyqrse.model.model.QRSEModel method) al_prior() (in module pyqrse.utilities.mathstats) AMQRSEKernel (class in pyqrse.kernels.testkernels) AQRSEKernel (class in pyqrse.kernels.ternarykernels) (class in pyqrse.kernels.testkernels) asymmetric_laplace() (in module pyqrse.utilities.mathstats) ATQRSEKernel (class in pyqrse.kernels.ternarykernels) available_kernels() (in module pyqrse.model.model) AXQRSEKernel (class in pyqrse.kernels.ternarykernels) (class in pyqrse.kernels.testkernels)

B

bic() (pyqrse.model.model.QRSEModel method)

C

chain (pyqrse.fittools.sampling.QRSESampler attribute) code (pyqrse.kernels.basekernels.QRSEKernelBase attribute) (pyqrse.model.model.QRSEModel attribute)

colors (pyqrse.utilities.plottools.QRSEPlotter attribute) cond_entropy() (in module pyqrse.utilities.mathstats)

D

date_to_datetime() (in module pyqrse.utilities.helpers) datetime_to_date() (in module pyqrse.utilities.helpers)

denorm_params() (pyqrse.kernels.basekernels.QRSEKernelBase method) docthief() (in module pyqrse.utilities.helpers)

E

entropy() (pyqrse.kernels.basekernels.QRSEKernelBase method) (pyqrse.kernels.binarykernels.ABXCQRSEKernel method) (pyqrse.kernels.binarykernels.ABXQRSEKernelNH method) (pyqrse.kernels.binarykernels.SFCQRSEKernel method) (pyqrse.kernels.binarykernels.SQRSEKernel method) (pyqrse.kernels.binarykernels.SQRSEKernelNoH method) (pyqrse.kernels.ternarykernels.AAQRSEKernel method) (pyqrse.kernels.ternarykernels.ATQRSEKernel method) (pyqrse.kernels.testkernels.AAC2QRSEKernel method) (pyqrse.kernels.testkernels.AAQRSEKernelLSE method) (pyqrse.model.model.QRSEModel method)

evidence() (pyqrse.model.model.QRSEModel method)

F

find_marg_like() (in module pyqrse.utilities.mathstats) find_support_bounds() (in module pyqrse.utilities.mathstats) fit() (pyqrse.fittools.optimizer.QRSEFitter method) (pyqrse.model.model.QRSEModel method) fitter (pyqrse.model.model.QRSEModel attribute)

fn_params (pyqrse.model.model.QRSEModel attribute) fparams (pyqrse.model.model.QRSEModel attribute) fpnames (pyqrse.model.model.QRSEModel attribute) fpnames_latex (pyqrse.model.model.QRSEModel attribute) from_pickle() (pyqrse.utilities.mixins.PickleMixin class method)

G

generic_actions (pyqrse.kernels.basekernels.QRSEKernelBase attribute) getcode() (pyqrse.kernels.basekernels.QRSEKernelBase class method)

getdiff() (pyqrse.fittools.sampling.QRSESampler method) getktype() (pyqrse.kernels.basekernels.QRSEKernelBase class method)

H

hess_adjust() (in module pyqrse.utilities.mathstats) hess_fun() (pyqrse.model.model.QRSEModel method)

hess_inv_fun() (pyqrse.model.model.QRSEModel method) history() (pyqrse.utilities.mixins.HistoryMixin method) HistoryMixin (class in pyqrse.utilities.mixins)

I

i_bounds (pyqrse.model.model.QRSEModel attribute) indif() (pyqrse.kernels.basekernels.QRSEKernelBase method) (pyqrse.kernels.binarykernels.SQRSEKernel method) (pyqrse.kernels.ternarykernels.AAQRSEKernel method)

indifference() (pyqrse.kernels.testkernels.AMQRSEKernel method) (pyqrse.model.model.QRSEModel method) init() (pyqrse.fittools.sampling.QRSESampler method) inv_cdf_sampler() (in module pyqrse.utilities.mathstats) is_pos_def() (in module pyqrse.utilities.mathstats)

J

jac_fun() (pyqrse.model.model.QRSEModel method)

joint_entropy() (in module pyqrse.utilities.mathstats)

K

kernel() (pyqrse.kernels.basekernels.QRSEKernelBase method) kernel_fun() (pyqrse.model.model.QRSEModel method) kernel_hierarchy_to_hash_bfs() (in module pyqrse.utilities.helpers)

kld() (pyqrse.fittools.optimizer.QRSEFitter method) klmin() (pyqrse.fittools.optimizer.QRSEFitter method) ktype (pyqrse.kernels.basekernels.QRSEKernelBase attribute) kwarg_filter() (in module pyqrse.utilities.helpers)

L

log_kernel() (pyqrse.kernels.basekernels.QRSEKernelBase method) (pyqrse.kernels.ternarykernels.AAQRSEKernel method) (pyqrse.kernels.ternarykernels.ATQRSEKernel method) (pyqrse.kernels.ternarykernels.AXQRSEKernel method) (pyqrse.kernels.testkernels.AAC2QRSEKernel method) (pyqrse.kernels.testkernels.AAQRSEKernelLSE method) (pyqrse.kernels.testkernels.AXQRSEKernel method) (pyqrse.model.model.QRSEModel method) log_marginal() (in module pyqrse.utilities.mathstats) log_partition() (pyqrse.model.model.QRSEModel method) log_prior() (pyqrse.model.model.QRSEModel method)

log_prob() (pyqrse.model.model.QRSEModel method) logits() (pyqrse.kernels.basekernels.QRSEKernelBase method) (pyqrse.kernels.binarykernels.ABXCQRSEKernel method) (pyqrse.kernels.binarykernels.SFCQRSEKernel method) (pyqrse.kernels.binarykernels.SQRSEKernel method) (pyqrse.kernels.ternarykernels.AAQRSEKernel method) (pyqrse.kernels.ternarykernels.ATQRSEKernel method) (pyqrse.kernels.testkernels.AAC2QRSEKernel method) (pyqrse.kernels.testkernels.AAQRSEKernelLSE method) (pyqrse.model.model.QRSEModel method) long_name (pyqrse.kernels.basekernels.QRSEKernelBase attribute), [1] (pyqrse.model.model.QRSEModel attribute)

M

make_es() (pyqrse.kernels.testkernels.AAQRSEKernelLSE method) make_evs() (pyqrse.kernels.testkernels.AAQRSEKernelLSE method) marg_actions() (in module pyqrse.utilities.mathstats) marg_entropy() (in module pyqrse.utilities.mathstats) marg_like (pyqrse.fittools.sampling.QRSESampler attribute) matrix_print() (in module pyqrse.utilities.helpers) max_like() (pyqrse.fittools.sampling.QRSESampler method)

max_params (pyqrse.fittools.sampling.QRSESampler attribute) mcmc() (pyqrse.fittools.sampling.QRSESampler method) mean() (pyqrse.model.model.QRSEModel method) mean_std_fun() (in module pyqrse.utilities.mathstats) mode() (pyqrse.model.model.QRSEModel method) model_p() (in module pyqrse.utilities.mathstats) mprint() (in module pyqrse.utilities.helpers)

N

n_actions (pyqrse.kernels.basekernels.QRSEKernelBase attribute) (pyqrse.model.model.QRSEModel attribute) n_errors (pyqrse.fittools.sampling.QRSESampler attribute) n_params (pyqrse.model.model.QRSEModel attribute)

name (pyqrse.kernels.basekernels.QRSEKernelBase attribute), [1] (pyqrse.model.model.QRSEModel attribute) next() (pyqrse.fittools.sampling.QRSESampler method) nll() (pyqrse.model.model.QRSEModel method) notes (pyqrse.model.model.QRSEModel attribute)

P

params (pyqrse.model.model.QRSEModel attribute) partition() (pyqrse.model.model.QRSEModel method) pdf() (pyqrse.model.model.QRSEModel method) PickleMixin (class in pyqrse.utilities.mixins) plot() (pyqrse.fittools.sampling.QRSESampler method) (pyqrse.model.model.QRSEModel method) (pyqrse.utilities.plottools.QRSEPlotter method) plotboth() (pyqrse.model.model.QRSEModel method) (pyqrse.utilities.plottools.QRSEPlotter method) plotdiff() (pyqrse.fittools.sampling.QRSESampler method) plotter (pyqrse.model.model.QRSEModel attribute) pnames (pyqrse.kernels.basekernels.QRSEKernelBase attribute), [1] (pyqrse.model.model.QRSEModel attribute) pnames_latex (pyqrse.kernels.basekernels.QRSEKernelBase attribute), [1] (pyqrse.model.model.QRSEModel attribute) potential() (pyqrse.kernels.basekernels.QRSEKernelBase method) (pyqrse.kernels.binarykernels.ABQRSEKernel method) (pyqrse.kernels.binarykernels.ABXCQRSEKernel method) (pyqrse.kernels.binarykernels.ABXQRSEKernel method) (pyqrse.kernels.binarykernels.ABXQRSEKernelNH method) (pyqrse.kernels.binarykernels.SFCQRSEKernel method) (pyqrse.kernels.binarykernels.SFQRSEKernel method) (pyqrse.kernels.binarykernels.SQRSEKernel method) (pyqrse.kernels.ternarykernels.AAQRSEKernel method) (pyqrse.kernels.ternarykernels.ATQRSEKernel method) (pyqrse.kernels.ternarykernels.AXQRSEKernel method) (pyqrse.kernels.testkernels.AAC2QRSEKernel method) (pyqrse.kernels.testkernels.AAQRSEKernelLSE method) (pyqrse.kernels.testkernels.AXQRSEKernel method) (pyqrse.model.model.QRSEModel method)

propose_new() (pyqrse.fittools.sampling.QRSESampler method) pyqrse (module) pyqrse.fittools (module) pyqrse.fittools.optimizer (module) pyqrse.fittools.sampling (module) pyqrse.kernels (module) pyqrse.kernels.basekernels (module) pyqrse.kernels.binarykernels (module) pyqrse.kernels.ternarykernels (module) pyqrse.kernels.testkernels (module) pyqrse.model (module) pyqrse.model.model (module) pyqrse.utilities (module) pyqrse.utilities.defaults (module) pyqrse.utilities.helpers (module) pyqrse.utilities.mathstats (module) pyqrse.utilities.mixins (module) pyqrse.utilities.plottools (module)

Q

qrse_weak_prior() (in module pyqrse.utilities.mathstats) QRSEFitter (class in pyqrse.fittools.optimizer) QRSEKernelBase (class in pyqrse.kernels.basekernels) QRSEKernelBaseBinary (class in pyqrse.kernels.basekernels)

QRSEKernelBaseTernary (class in pyqrse.kernels.basekernels) QRSEModel (class in pyqrse.model.model) QRSEPlotter (class in pyqrse.utilities.plottools) QRSESampler (class in pyqrse.fittools.sampling)

R

read_only_class_property() (in module pyqrse.utilities.helpers) ReadOnlyClassProperty (class in pyqrse.utilities.helpers) rejection_sample() (in module pyqrse.utilities.mathstats)

res (pyqrse.model.model.QRSEModel attribute) reset_history() (pyqrse.utilities.mixins.HistoryMixin method) reset_label_settings() (in module pyqrse.utilities.defaults) rvs() (pyqrse.model.model.QRSEModel method)

S

sampler (pyqrse.model.model.QRSEModel attribute) save_history() (pyqrse.utilities.mixins.HistoryMixin method) set_color_order() (pyqrse.utilities.plottools.QRSEPlotter method) set_colors() (pyqrse.utilities.plottools.QRSEPlotter method) set_hess_inv() (pyqrse.model.model.QRSEModel method) set_kl_target() (pyqrse.fittools.optimizer.QRSEFitter method) set_log_prior() (pyqrse.model.model.QRSEModel method) set_params() (pyqrse.fittools.sampling.QRSESampler method) (pyqrse.model.model.QRSEModel method) set_params0() (pyqrse.kernels.basekernels.QRSEKernelBase method) (pyqrse.kernels.binarykernels.ABQRSEKernel method) (pyqrse.kernels.binarykernels.ABXCQRSEKernel method) (pyqrse.kernels.binarykernels.ABXQRSEKernel method) (pyqrse.kernels.binarykernels.ABXQRSEKernelNH method) (pyqrse.kernels.binarykernels.SFCQRSEKernel method) (pyqrse.kernels.binarykernels.SFQRSEKernel method) (pyqrse.kernels.binarykernels.SQRSEKernel method) (pyqrse.kernels.ternarykernels.AAQRSEKernel method) (pyqrse.kernels.ternarykernels.AAXQRSEKernel method) (pyqrse.kernels.ternarykernels.ATQRSEKernel method) (pyqrse.kernels.ternarykernels.AXQRSEKernel method) (pyqrse.kernels.testkernels.AAC2QRSEKernel method) (pyqrse.kernels.testkernels.AMQRSEKernel method) (pyqrse.kernels.testkernels.AXQRSEKernel method)

setup_from_params() (pyqrse.model.model.QRSEModel method) SFCQRSEKernel (class in pyqrse.kernels.binarykernels) SFQRSEKernel (class in pyqrse.kernels.binarykernels) split_strip_parser() (in module pyqrse.utilities.helpers) SQRSEKernel (class in pyqrse.kernels.binarykernels) SQRSEKernelNoH (class in pyqrse.kernels.binarykernels) std() (pyqrse.model.model.QRSEModel method)

T

to_pickle() (pyqrse.utilities.mixins.PickleMixin method)

U

update_model() (pyqrse.fittools.optimizer.QRSEFitter method) update_p0() (pyqrse.model.model.QRSEModel method)

use_entropy (pyqrse.kernels.basekernels.QRSEKernelBase attribute), [1] use_xi (pyqrse.kernels.basekernels.QRSEKernelBase attribute), [1] (pyqrse.model.model.QRSEModel attribute)

V

view_label_settings() (in module pyqrse.utilities.defaults)

X

xi (pyqrse.kernels.basekernels.QRSEKernelBase attribute), [1] (pyqrse.model.model.QRSEModel attribute)